Miyakogusa Predicted Gene

Lj0g3v0195839.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5XY08_PRUPE 1788 62.4 72.9 (tr|M5XY08) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1
TAIR_pep AT1G58060.1 1593 59.5 71.6 | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459
Medicago Medtr4g134790.1 1967 72.1 80.6 | ATP-dependent RNA helicase | HC | chr4:56529889-56495557 | 20130731
Soybean Glyma17g00440.1 697 68.0 75.7  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0195839.1 length: 1464 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1e-10 954-1040
HMMSmart SM00490 helicase 1.7e-14 934-1040
ProfileScan PS51194 HELICASE_CTER 15.747 906-1081
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 9.2e-20 1104-1205
HMMSmart SM00847 Helicase 3.2e-22 1103-1206
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 5.2e-10 628-786
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 4.4e-16 1247-1393
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5.2e-26 612-817
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.997 627-803
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.7e-31 885-1173
626-785
no_ID  
Coil coil coiled-coil NA 195-216
234-264
267-288
377-402
887-908
Gene3D G3DSA:3.40.50.300 no description 6.7e-13 617-787
908-1056
HMMPanther PTHR18934 ATP-DEPENDENT 0 390-1459
HMMPanther PTHR18934:SF68 SUBFAMILY 0 390-1459
Seg seg seg NA 16-22
32-43
51-74
144-166
178-182
203-215
238-253
281-291
334-343
391-401
1026-1038
Putative transmembrane regions
  From To
TM segments
SOSUI		 1133 1155
Wolf-PSORT
Lj0g3v0195839.1	chlo 3, nucl 3, plas 3, nucl_plas 3, mito 2, golg 2, cysk_nucl 2, cysk_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0195839.1