Miyakogusa Predicted Gene

Lj0g3v0195829.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5XY08_PRUPE 1650 72.4 83.8 (tr|M5XY08) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1
TAIR_pep AT1G58060.1 1578 57.4 69.3 | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459
Medicago Medtr4g134790.1 1924 69.4 77.6 | ATP-dependent RNA helicase | HC | chr4:56529889-56495557 | 20130731
Soybean Glyma17g00440.1 700 68.2 75.7  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0195829.1 length: 1522 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.1e-10 1012-1098
HMMSmart SM00490 helicase 1.7e-14 992-1098
ProfileScan PS51194 HELICASE_CTER 15.747 964-1139
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 9.7e-20 1162-1263
HMMSmart SM00847 Helicase 3.2e-22 1161-1264
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 5.5e-10 686-844
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 4.6e-16 1305-1451
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5.2e-26 670-875
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.997 685-861
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.7e-31 943-1231
684-843
no_ID  
Coil coil coiled-coil NA 195-216
234-264
267-288
381-402
439-460
945-966
Gene3D G3DSA:3.40.50.300 no description 7.1e-13 675-845
966-1114
HMMPanther PTHR18934 ATP-DEPENDENT 0 376-1517
HMMPanther PTHR18934:SF68 SUBFAMILY 0 376-1517
Seg seg seg NA 16-22
32-43
51-74
144-166
178-182
203-215
238-253
281-291
334-343
411-422
449-459
1084-1096
superfamily SSF54768 dsRNA-binding 7.5e-06 403-519
Putative transmembrane regions
  From To
TM segments
SOSUI		 1191 1213
Wolf-PSORT
Lj0g3v0195829.1	chlo 3, nucl 3, plas 3, nucl_plas 3, mito 2, golg 2, cysk_nucl 2, cysk_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0195829.1