Miyakogusa Predicted Gene
- Lj0g3v0195299.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7N2K2_SOYBN |
243 |
50.9 |
58.2 |
(tr|K7N2K2) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G76110.1 |
57.0 |
39.3 |
60.7 |
| Symbols: | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:28555287-28557465 REVERSE LENGTH=338 |
| Medicago |
Medtr5g080030.1 |
178 |
49.5 |
59.9 |
| ARID/bright DNA-binding domain protein | LC | chr5:34254593-34257678 | 20130731 |
| Soybean |
Glyma04g02210.1 |
60.8 |
33.6 |
47.7 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0195299.1 |
length: 288 aa. |
| IPR001606 |
ARID/BRIGHT DNA-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Gene3D |
G3DSA:1.10.150.60 |
no description |
4.8e-13 |
40-104 |
| HMMPfam |
PF01388 |
ARID |
3.4e-10 |
40-95 |
| HMMSmart |
SM00501 |
BRIGHT, |
0.0002 |
16-100 |
| ProfileScan |
PS51011 |
ARID |
12.905 |
1-99 |
| superfamily |
SSF46774 |
ARID-like |
1e-15 |
15-113 |
| IPR009071 |
High mobility group (HMG) box domain |
| Gene3D |
G3DSA:1.10.30.10 |
no description |
1.8e-10 |
131-217 |
| HMMPfam |
PF00505 |
HMG_box |
2.6e-05 |
169-202 |
| ProfileScan |
PS50118 |
HMG_BOX_2 |
10.801 |
137-206 |
| superfamily |
SSF47095 |
HMG-box |
1.5e-12 |
117-210 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
188-216 |
| HMMSmart |
SM01014 |
ARID/BRIGHT |
2.5e-08 |
12-95 |
| Seg |
seg |
seg |
NA |
189-208 |
- Wolf-PSORT
Lj0g3v0195299.1 nucl 8.5, cyto_nucl 6, cyto 2.5, chlo 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0195299.1 |
|