Miyakogusa Predicted Gene

Lj0g3v0190499.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N0S6_SOYBN 848 74.8 79.3 (tr|I1N0S6) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT4G16630.1 738 63.4 73.3 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr4:9362176-9366449 REVERSE LENGTH=789
Medicago Medtr3g049990.1 787 70.3 77.4 | DEAD-box ATP-dependent RNA helicase | HC | chr3:19680414-19670656 | 20130731
Soybean Glyma18g11950.1 847 74.7 79.3  
LJGI gnl|LJGI|BW596008 801 98.1 98.1 similar to UniRef100_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28; n=1; Arabidopsis thaliana|Rep: DEAD-box ATP-dependent RNA helicase 28 - Arabidopsis thaliana (Mouse-ear cress), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0190499.1 length: 609 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 274-282
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1e-25 392-463
HMMSmart SM00490 helicase 5.6e-29 378-463
ProfileScan PS51194 HELICASE_CTER 20.722 339-502
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.1e-45 147-317
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 4.5e-56 142-343
ProfileScan PS51192 HELICASE_ATP_BIND_1 30.138 154-328
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 11.385 123-151
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 5.6e-65 193-486
no_ID  
Coil coil coiled-coil NA 501-549
587-608
Gene3D G3DSA:3.40.50.300 no description 4.3e-44 115-327
328-496
HMMPanther PTHR24031 FAMILY 3.2e-256 10-605
HMMPanther PTHR24031:SF93 PREDICTED 3.2e-256 10-605
Seg seg seg NA 13-35
76-86
94-108
264-276
342-353
530-543
591-605
Wolf-PSORT
Lj0g3v0190499.1	cyto 7, nucl 3, chlo 2, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0190499.1