Miyakogusa Predicted Gene
- Lj0g3v0187669.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LV82_SOYBN |
228 |
86.7 |
95.8 |
(tr|I1LV82) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G78650.1 |
162 |
62.5 |
79.2 |
| Symbols: POLD3 | DNA-directed DNA polymerases | chr1:29582987-29585508 FORWARD LENGTH=509 |
| Medicago |
Medtr2g075820.2 |
205 |
81.7 |
91.7 |
| DNA polymerase subunit Cdc27 | HC | chr2:31720156-31725437 | 20130731 |
| Soybean |
Glyma12g36020.1 |
228 |
86.7 |
95.8 |
|
| LJGI |
gnl|LJGI|TC57363 |
714 |
100.0 |
100.0 |
similar to UniRef100_A7P225 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0187669.1 |
length: 120 aa. |
| IPR019038 |
DNA polymerase subunit Cdc27 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006260 |
DNA replication |
|
|
| HMMPfam |
PF09507 |
CDC27 |
2.9e-19 |
23-114 |
| no_ID |
|
| HMMPanther |
PTHR17598 |
FAMILY |
1.9e-59 |
2-120 |
| HMMPanther |
PTHR17598:SF3 |
SUBFAMILY |
1.9e-59 |
2-120 |
- Wolf-PSORT
Lj0g3v0187669.1 cyto 9.5, cyto_E.R. 5.5, nucl 2, chlo 1, extr 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0187669.1 |
|