Miyakogusa Predicted Gene

Lj0g3v0187429.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JLJ2_MEDTR 358 77.2 82.3 (tr|G7JLJ2) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Medicago truncatula GN=MTR_4g120070 PE=4 SV=1
TAIR_pep AT1G33390.1 258 60.2 71.0 | Symbols: ATFAS4, FAS4 | RNA helicase family protein | chr1:12099738-12104108 REVERSE LENGTH=1237
Medicago Medtr4g120070.1 358 77.2 82.3 | RNA helicase, putative | HC | chr4:49772806-49778936 | 20130731
Soybean Glyma03g02730.1 349 74.7 82.3  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0187429.1 length: 237 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.7e-11 2-81
HMMSmart SM00490 helicase 9.5e-06 1-81
ProfileScan PS51194 HELICASE_CTER 12.486 1-122
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 2.5e-13 142-216
HMMSmart SM00847 Helicase 4.4e-05 142-226
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.3e-38 7-185
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.7e-10 4-92
HMMPanther PTHR18934 ATP-DEPENDENT 8.4e-95 1-214
HMMPanther PTHR18934:SF68 SUBFAMILY 8.4e-95 1-214
Seg seg seg NA 66-81
199-207
Putative transmembrane regions
  From To
TM segments
SOSUI		 194 216
Wolf-PSORT
Lj0g3v0187429.1	chlo 9, cyto 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0187429.1