Miyakogusa Predicted Gene

Lj0g3v0181969.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IRR0_MEDTR 345 70.5 79.7 (tr|G7IRR0) Protein binding protein OS=Medicago truncatula GN=MTR_2g094130 PE=4 SV=1
TAIR_pep AT5G60580.3 271 61.9 76.2 | Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487
Medicago Medtr2g094130.1 350 71.1 80.4 | RING/U-box protein | HC | chr2:40144316-40148220 | 20130731
Soybean Glyma12g07290.1 337 72.8 79.5  
LJGI gnl|LJGI|TC64680 323 81.8 81.8 similar to UniRef100_A7PT25 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0181969.1 length: 232 aa.
IPR011016 Zinc finger, RING-CH-type
method AccNumber shortName E-value location
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF12906 RINGv 2e-09 9-44
HMMSmart SM00744 The 4.1e-11 4-45
ProfileScan PS51292 ZF_RING_CH 15.285 1-51
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.6e-11 6-48
no_ID  
HMMPanther PTHR23012 MEMBRANE 2e-118 1-222
HMMPanther PTHR23012:SF25 PREDICTED 2e-118 1-222
Seg seg seg NA 124-135
superfamily SSF57850 RING/U-box 5.2e-10 4-51
Putative transmembrane regions
  From To
TM segments
SOSUI		 79 101
105 127
135 157
166 188
Wolf-PSORT
Lj0g3v0181969.1	chlo 5, cyto 5, nucl 2, extr 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0181969.1