Miyakogusa Predicted Gene

Lj0g3v0179289.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7N0N9_SOYBN 373 38.3 55.2 (tr|K7N0N9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G39710.1 345 37.8 53.9 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747
Medicago Medtr1g033960.1 360 37.3 53.5 | PPR containing plant-like protein | HC | chr1:12282466-12279095 | 20130731
Soybean Glyma07g29110.1 311 35.1 52.0  
LJGI gnl|LJGI|TC81373 335 83.3 83.3 similar to UniRef100_A7PSR1 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0179289.1 length: 598 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.037 39-60
449-477
HMMPfam PF12854 PPR_1 4.9e-06 93-125
199-230
HMMPfam PF13041 PPR_2 1.4e-13 134-180
245-292
HMMTigr TIGR00756 PPR: 0.0031 66-99
100-134
136-169
171-204
206-238
248-282
449-480
ProfileScan PS51375 PPR 9.536 28-62
63-97
98-132
133-167
168-202
203-237
246-280
318-352
353-387
446-480
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 7.8e-06 76-279
no_ID  
HMMPanther PTHR24015 FAMILY 1.6e-84 36-492
HMMPanther PTHR24015:SF0 SUBFAMILY 1.6e-84 36-492
Seg seg seg NA 146-160
superfamily SSF48452 TPR-like 2.6e-08 77-298
Putative transmembrane regions
  From To
TM segments
SOSUI		 568 590
Wolf-PSORT
Lj0g3v0179289.1	chlo 7, E.R. 2, nucl 1, cyto 1, mito 1, plas 1, vacu 1, cyto_nucl 1, nucl_plas 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0179289.1