Miyakogusa Predicted Gene

Lj0g3v0174759.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7K8F2_MEDTR 488 53.3 68.0 (tr|G7K8F2) Cc-nbs-lrr resistance protein OS=Medicago truncatula GN=MTR_5g092190 PE=4 SV=1

TAIR_pep AT1G72930.1 143 48.3 61.1 | Symbols: TIR | toll/interleukin-1 receptor-like | chr1:27439476-27440147 FORWARD LENGTH=176

Medicago Medtr5g092990.1 471 49.0 63.7 | TIR-like domain protein TSDC protein | LC | chr5:40599167-40596848 | 20130731

Soybean Glyma02g45970.1 212 59.5 73.4

LJGI gnl|LJGI|DC599828 172 80.2 80.2 weakly similar to UniRef100_A7PQ23 Cluster: Chromosome chr18 scaffold_24, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_24, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0174759.1 length: 547 aa.

IPR000157 Toll/interleukin-1 receptor homology (TIR) domain

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

Biological Process GO:0007165 signal transduction

HMMPfam PF01582 TIR 2.1e-33 357-489

HMMSmart SM00255 Toll 3.8e-43 353-495

ProfileScan PS50104 TIR 29.772 352-495

superfamily SSF52200 Toll/Interleukin 3.9e-39 342-498

IPR000767 Disease resistance protein

Biological Process GO:0006952 defense response

FPrintScan PR00364 DISEASERSIST 4.5e-07 153-168
227-241
318-332

IPR002182 NB-ARC

Molecular Function GO:0043531 ADP binding

HMMPfam PF00931 NB-ARC 1.9e-30 140-352

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 5.3e-19 112-353

no_ID

Gene3D G3DSA:3.40.50.10140 no description 6.2e-22 351-484

Gene3D G3DSA:3.40.50.300 no description 2.1e-07 148-246

HMMPanther PTHR11017 LEUCINE-RICH 2.1e-49 246-516

HMMPanther PTHR11017:SF130DISEASE RESISTANCE 2.1e-49 246-516

Seg seg seg NA 118-127
167-179

Wolf-PSORT

Lj0g3v0174759.1 nucl 10, chlo 2, cysk 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0174759.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7K8F2_MEDTR	488	53.3	68.0	(tr\|G7K8F2) Cc-nbs-lrr resistance protein OS=Medicago truncatula GN=MTR_5g092190 PE=4 SV=1
TAIR_pep	AT1G72930.1	143	48.3	61.1	\| Symbols: TIR \| toll/interleukin-1 receptor-like \| chr1:27439476-27440147 FORWARD LENGTH=176
Medicago	Medtr5g092990.1	471	49.0	63.7	\| TIR-like domain protein TSDC protein \| LC \| chr5:40599167-40596848 \| 20130731
Soybean	Glyma02g45970.1	212	59.5	73.4
LJGI	gnl\|LJGI\|DC599828	172	80.2	80.2	weakly similar to UniRef100_A7PQ23 Cluster: Chromosome chr18 scaffold_24, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr18 scaffold_24, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)

IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Lj0g3v0174759.1				length: 547 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
Biological Process	GO:0007165	signal transduction
HMMPfam	PF01582	TIR	2.1e-33	357-489
HMMSmart	SM00255	Toll	3.8e-43	353-495
ProfileScan	PS50104	TIR	29.772	352-495
superfamily	SSF52200	Toll/Interleukin	3.9e-39	342-498
IPR000767	Disease resistance protein
Biological Process	GO:0006952	defense response
FPrintScan	PR00364	DISEASERSIST	4.5e-07	153-168 227-241 318-332
IPR002182	NB-ARC
Molecular Function	GO:0043531	ADP binding
HMMPfam	PF00931	NB-ARC	1.9e-30	140-352
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	5.3e-19	112-353
no_ID
Gene3D	G3DSA:3.40.50.10140	no description	6.2e-22	351-484
Gene3D	G3DSA:3.40.50.300	no description	2.1e-07	148-246
HMMPanther	PTHR11017	LEUCINE-RICH	2.1e-49	246-516
HMMPanther	PTHR11017:SF130DISEASE	RESISTANCE	2.1e-49	246-516
Seg	seg	seg	NA	118-127 167-179