Miyakogusa Predicted Gene

Lj0g3v0173989.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JQF9_SOYBN 495 75.9 78.6 (tr|I1JQF9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G03110.1 342 57.9 67.3 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense related 1 | chr4:1376612-1379275 REVERSE LENGTH=441
Medicago Medtr7g107580.1 501 78.5 80.3 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr7:43890650-43885583 | 20130731
Soybean Glyma03g36650.1 495 75.9 78.6  
LJGI gnl|LJGI|TC76132 547 100.0 100.0 similar to UniRef100_Q0DIP2 Cluster: Os05g0373400 protein; n=1; Oryza sativa Japonica Group|Rep: Os05g0373400 protein - Oryza sativa subsp. japonica (Rice), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0173989.1 length: 323 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.3e-18 2-63
240-310
HMMSmart SM00360 RNA 6.8e-25 2-71
239-312
ProfileScan PS50102 RRM 17.541 1-75
238-316
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.4e-26 2-86
222-321
no_ID  
HMMPanther PTHR24622 FAMILY 3.6e-63 1-323
HMMPanther PTHR24622:SF7 SUBFAMILY 3.6e-63 1-323
Seg seg seg NA 76-92
195-230
superfamily SSF54928 RNA-binding 3.4e-34 2-323
Wolf-PSORT
Lj0g3v0173989.1	nucl 12, chlo 1, cyto 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0173989.1