Miyakogusa Predicted Gene

Lj0g3v0173489.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7ZYK6_MEDTR 499 72.1 77.3 (tr|G7ZYK6) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_074s0017 PE=4 SV=1
TAIR_pep AT3G02420.1 424 62.1 70.4 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:496179-498772 REVERSE LENGTH=348
Medicago Medtr6g016780.1 499 72.1 77.3 | plant/F16B3-5 protein | HC | chr6:6454223-6447946 | 20130731
Soybean Glyma13g07400.2 494 69.5 76.4  
LJGI gnl|LJGI|TC57710 2056 99.9 99.9 similar to UniRef100_A7PAK5 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (87%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0173489.1 length: 346 aa.
IPR005344 Uncharacterised protein family UPF0121
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
HMMPfam PF03661 UPF0121 4.8e-07 126-330
no_ID  
HMMPanther PTHR30603 RNA 5.3e-73 5-346
Seg seg seg NA 15-25
72-91
96-114
135-148
Putative transmembrane regions
  From To
TM segments
SOSUI		 127 149
186 208
212 234
269 291
298 320
Wolf-PSORT
Lj0g3v0173489.1	nucl 8, mito 2, cyto 1, plas 1, vacu 1, cysk 1, chlo_mito 1, cyto_mito 1, cysk_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0173489.1