Miyakogusa Predicted Gene

Lj0g3v0169049.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1K132_SOYBN 1387 83.5 89.0 (tr|I1K132) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT3G01720.1 1160 71.8 83.9 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr3:262412-265608 REVERSE LENGTH=802

Medicago Medtr0044s0180.1 1252 77.9 86.7 | peptidyl serine alpha-galactosyltransferase | HC | scaffold0044:58032-50900 | 20130731

Soybean Glyma05g06390.1 1382 83.9 89.5

LJGI gnl|LJGI|TC76129 1491 100.0 100.0 homologue to UniRef100_A7PLW1 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0169049.1 length: 814 aa.

no_ID

method AccNumber shortName E-value location

Seg seg seg NA 4-17
725-739
780-796

Putative transmembrane regions

From To

TM segments
SOSUI 4 22

755 777

Wolf-PSORT

Lj0g3v0169049.1 mito 4, chlo 3, nucl 2, cyto 2, cyto_nucl 2, cyto_mito 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0169049.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1K132_SOYBN	1387	83.5	89.0	(tr\|I1K132) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT3G01720.1	1160	71.8	83.9	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). \| chr3:262412-265608 REVERSE LENGTH=802
Medicago	Medtr0044s0180.1	1252	77.9	86.7	\| peptidyl serine alpha-galactosyltransferase \| HC \| scaffold0044:58032-50900 \| 20130731
Soybean	Glyma05g06390.1	1382	83.9	89.5
LJGI	gnl\|LJGI\|TC76129	1491	100.0	100.0	homologue to UniRef100_A7PLW1 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (28%)

no_ID
Lj0g3v0169049.1				length: 814 aa.
method	AccNumber	shortName	E-value	location
Seg	seg	seg	NA	4-17 725-739 780-796