Miyakogusa Predicted Gene
- Lj0g3v0167659.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1N2U4_SOYBN |
336 |
70.4 |
81.2 |
(tr|I1N2U4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G09050.1 |
239 |
53.0 |
68.4 |
| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 47 species: Archae - 4; Bacteria - 10; Metazoa - 33; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr3:2764860-2765907 FORWARD LENGTH=258 |
| Medicago |
Medtr4g015010.1 |
332 |
67.2 |
80.3 |
| transmembrane protein, putative | HC | chr4:4329550-4327346 | 20130731 |
| Soybean |
Glyma18g42480.1 |
336 |
70.4 |
81.2 |
|
| LJGI |
gnl|LJGI|TC61903 |
1451 |
100.0 |
100.0 |
weakly similar to UniRef100_A7PP11 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0167659.1 |
length: 242 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Coil |
coil |
coiled-coil |
NA |
128-149 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
189 |
209 |
| 216 |
236 |
- Wolf-PSORT
Lj0g3v0167659.1 chlo 6, mito 3, plas 2, nucl 1, vacu 1, pero 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0167659.1 |
|