Miyakogusa Predicted Gene
- Lj0g3v0164349.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KN01_MEDTR |
519 |
73.7 |
81.8 |
(tr|G7KN01) STAM-binding protein OS=Medicago truncatula GN=MTR_6g083940 PE=4 SV=1 |
| TAIR_pep |
AT1G48790.1 |
295 |
47.6 |
61.5 |
| Symbols: AMSH1 | associated molecule with the SH3 domain of STAM 1 | chr1:18043925-18047427 REVERSE LENGTH=507 |
| Medicago |
Medtr6g083940.1 |
519 |
73.7 |
81.8 |
| AMSH-like ubiquitin thioesterase | HC | chr6:31340337-31333153 | 20130731 |
| Soybean |
Glyma07g10350.1 |
509 |
74.9 |
80.7 |
|
| LJGI |
gnl|LJGI|TC66605 |
2079 |
100.0 |
100.0 |
similar to UniRef100_A7PGV7 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (84%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0164349.1 |
length: 357 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR12947 |
AMSH |
5.9e-69 |
1-357 |
| HMMPanther |
PTHR12947:SF4 |
SUBFAMILY |
5.9e-69 |
1-357 |
| Seg |
seg |
seg |
NA |
83-105 |
- Wolf-PSORT
Lj0g3v0164349.1 chlo 7, vacu 2, cyto 1, mito 1, extr 1, pero 1, cysk 1, E.R._vacu 1, cyto_pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0164349.1 |
|