Miyakogusa Predicted Gene

Lj0g3v0163669.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL M5XPR0_PRUPE 336 74.6 77.6 (tr|M5XPR0) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008047mg PE=4 SV=1

TAIR_pep AT3G24350.2 262 62.1 69.8 | Symbols: SYP32 | syntaxin of plants 32 | chr3:8837733-8839402 FORWARD LENGTH=361

Medicago Medtr3g108160.1 298 71.2 73.8 | syntaxin of plants protein | HC | chr3:49983199-49979202 | 20130731

Soybean Glyma06g07770.1 318 73.4 75.1

LJGI gnl|LJGI|TC59354 605 100.0 100.0 similar to UniRef100_A7PEU9 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0163669.1 length: 233 aa.

IPR000727 Target SNARE coiled-coil domain

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF05739 SNARE 7.8e-17 166-224

HMMSmart SM00397 Helical 2e-15 155-222

ProfileScan PS50192 T_SNARE 17.281 160-222

IPR006012 Syntaxin/epimorphin, conserved site

Molecular Function GO:0005484 SNAP receptor activity

Biological Process GO:0006886 intracellular protein transport

Cellular Component GO:0016020 membrane

PatternScan PS00914 SYNTAXIN NA 166-205

IPR010989 t-SNARE

Cellular Component GO:0016020 membrane

Biological Process GO:0016192 vesicle-mediated transport

superfamily SSF47661 t-snare 3.2e-33 2-215

no_ID

Gene3D G3DSA:1.20.58.70 no description 2.8e-36 129-216

HMMPanther PTHR19957 SYNTAXIN 3.9e-90 1-233

HMMPanther PTHR19957:SF3 SYNTAXIN 3.9e-90 1-233

Seg seg seg NA 37-51
103-122
143-154

Wolf-PSORT

Lj0g3v0163669.1 nucl 5, nucl_plas 4.5, chlo 2, cyto 2, plas 2, mito 1, extr 1, golg 1, cyto_pero 1, cyto_E.R. 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0163669.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	M5XPR0_PRUPE	336	74.6	77.6	(tr\|M5XPR0) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008047mg PE=4 SV=1
TAIR_pep	AT3G24350.2	262	62.1	69.8	\| Symbols: SYP32 \| syntaxin of plants 32 \| chr3:8837733-8839402 FORWARD LENGTH=361
Medicago	Medtr3g108160.1	298	71.2	73.8	\| syntaxin of plants protein \| HC \| chr3:49983199-49979202 \| 20130731
Soybean	Glyma06g07770.1	318	73.4	75.1
LJGI	gnl\|LJGI\|TC59354	605	100.0	100.0	similar to UniRef100_A7PEU9 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%)

IPR000727	Target SNARE coiled-coil domain
Lj0g3v0163669.1				length: 233 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF05739	SNARE	7.8e-17	166-224
HMMSmart	SM00397	Helical	2e-15	155-222
ProfileScan	PS50192	T_SNARE	17.281	160-222
IPR006012	Syntaxin/epimorphin, conserved site
Molecular Function	GO:0005484	SNAP receptor activity
Biological Process	GO:0006886	intracellular protein transport
Cellular Component	GO:0016020	membrane
PatternScan	PS00914	SYNTAXIN	NA	166-205
IPR010989	t-SNARE
Cellular Component	GO:0016020	membrane
Biological Process	GO:0016192	vesicle-mediated transport
superfamily	SSF47661	t-snare	3.2e-33	2-215
no_ID
Gene3D	G3DSA:1.20.58.70	no description	2.8e-36	129-216
HMMPanther	PTHR19957	SYNTAXIN	3.9e-90	1-233
HMMPanther	PTHR19957:SF3	SYNTAXIN	3.9e-90	1-233
Seg	seg	seg	NA	37-51 103-122 143-154