Miyakogusa Predicted Gene
- Lj0g3v0163349.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7K593_MEDTR |
387 |
79.0 |
87.2 |
(tr|G7K593) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_5g016570 PE=4 SV=1 |
| TAIR_pep |
AT3G50120.1 |
281 |
55.7 |
72.8 |
| Symbols: | Plant protein of unknown function (DUF247) | chr3:18585157-18587246 REVERSE LENGTH=531 |
| Medicago |
Medtr5g016570.1 |
387 |
79.0 |
87.2 |
| UPF0481 plant-like protein | HC | chr5:5956062-5953978 | 20130731 |
| Soybean |
Glyma11g05630.1 |
287 |
79.9 |
88.5 |
|
| LJGI |
gnl|LJGI|TC81447 |
482 |
87.0 |
87.0 |
weakly similar to UniRef100_A7PLG1 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0163349.1 |
length: 244 aa. |
| IPR004158 |
Protein of unknown function DUF247, plant |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03140 |
DUF247 |
1.9e-49 |
104-244 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
153-174 |
| HMMPanther |
PTHR31549 |
FAMILY |
6.9e-59 |
64-244 |
| Seg |
seg |
seg |
NA |
42-56 |
- Wolf-PSORT
Lj0g3v0163349.1 nucl 5.5, cyto_nucl 4.5, cyto 2.5, mito 2, chlo 1, plas 1, pero 1, cysk 1, cyto_mito 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0163349.1 |
|