Miyakogusa Predicted Gene
- Lj0g3v0161879.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7K5X8_SOYBN |
938 |
82.6 |
89.8 |
(tr|K7K5X8) Pectinesterase OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT4G02320.1 |
566 |
55.2 |
72.0 |
| Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1022725-1026118 REVERSE LENGTH=518 |
| Medicago |
Medtr7g108905.1 |
848 |
76.8 |
89.0 |
| pectinesterase/pectinesterase inhibitor | HC | chr7:44493233-44498836 | 20130731 |
| Soybean |
Glyma19g40020.1 |
874 |
77.1 |
87.0 |
|
| LJGI |
gnl|LJGI|TC74901 |
936 |
100.0 |
100.0 |
similar to UniRef100_Q9M5J0 Cluster: Pectin methylesterase isoform alpha; n=1; Vigna radiata var. radiata|Rep: Pectin methylesterase isoform alpha - Phaseolus aureus (Mung bean) (Vigna radiata), partial (54%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0161879.1 |
length: 559 aa. |
| IPR000070 |
Pectinesterase, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005618 |
cell wall |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Biological Process |
GO:0042545 |
cell wall modification |
|
|
| HMMPfam |
PF01095 |
Pectinesterase |
4.9e-145 |
247-543 |
| IPR006501 |
Pectinesterase inhibitor |
| Molecular Function |
GO:0004857 |
enzyme inhibitor activity |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Gene3D |
G3DSA:1.20.140.40 |
no description |
8e-31 |
50-202 |
| HMMPfam |
PF04043 |
PMEI |
1.6e-26 |
48-197 |
| HMMSmart |
SM00856 |
Plant |
2.6e-32 |
44-197 |
| HMMTigr |
TIGR01614 |
PME_inhib: |
1.3e-23 |
19-200 |
| superfamily |
SSF101148 |
Plant |
5.5e-25 |
43-204 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
2.5e-118 |
240-558 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
2.4e-124 |
244-554 |
| IPR018040 |
Pectinesterase, active site |
| PatternScan |
PS00503 |
PECTINESTERASE_2 |
NA |
391-400 |
| no_ID |
|
| HMMPanther |
PTHR31707 |
FAMILY |
6.2e-263 |
45-559 |
| HMMPanther |
PTHR31707:SF0 |
SUBFAMILY |
6.2e-263 |
45-559 |
| Seg |
seg |
seg |
NA |
9-26 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
7 |
29 |
- Wolf-PSORT
Lj0g3v0161879.1 vacu 6, golg 3, chlo 2, mito 1, extr 1, E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0161879.1 |
|