Miyakogusa Predicted Gene

Lj0g3v0161609.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IA39_MEDTR 1007 71.8 83.7 (tr|G7IA39) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_1g035250 PE=4 SV=1
TAIR_pep AT3G48810.1 738 56.2 72.4 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18097048-18099027 FORWARD LENGTH=659
Medicago Medtr1g035250.1 1004 72.1 83.8 | PPR containing plant-like protein | HC | chr1:12584008-12586490 | 20130731
Soybean Glyma07g20380.1 829 68.8 83.5  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0161609.1 length: 661 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0011 115-141
317-346
HMMPfam PF12854 PPR_1 5.4e-08 554-584
HMMPfam PF13041 PPR_2 5e-12 178-227
247-291
348-397
418-466
488-536
HMMPfam PF13812 PPR_3 0.23 77-106
HMMTigr TIGR00756 PPR: 7e-06 115-145
181-214
216-237
247-280
281-315
316-350
351-385
387-420
421-455
456-490
492-524
526-560
ProfileScan PS51375 PPR 6.237 74-108
109-143
144-178
179-213
244-278
214-237
279-313
314-348
349-383
384-418
419-453
454-488
489-523
524-558
559-594
595-629
630-661
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 7.4e-05 556-581
no_ID  
HMMPanther PTHR24015 FAMILY 3.1e-259 17-641
HMMPanther PTHR24015:SF86 SUBFAMILY 3.1e-259 17-641
Wolf-PSORT
Lj0g3v0161609.1	chlo 4.5, cyto 4, chlo_mito 3.5, nucl 3, mito 1.5, cysk_nucl 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0161609.1