Miyakogusa Predicted Gene

Lj0g3v0161109.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B0BLA5_LOTJA 1118 63.2 71.0 (tr|B0BLA5) CM0545.410.nc protein (Fragment) OS=Lotus japonicus GN=CM0545.410.nc PE=1 SV=1
TAIR_pep AT1G45616.1 489 36.4 51.9 | Symbols: AtRLP6, RLP6 | receptor like protein 6 | chr1:17183550-17186534 REVERSE LENGTH=994
Medicago Medtr5g087320.1 1116 61.3 70.9 | receptor-like protein | LC | chr5:37825611-37822549 | 20130731
Soybean Glyma14g04710.1 904 55.2 63.7  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0161109.1 length: 984 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.4 559-575
604-622
ProfileScan PS51450 LRR 5.933 116-137
141-163
192-213
241-264
265-287
289-310
313-335
361-384
385-407
431-453
409-430
455-476
506-529
530-552
559-581
604-626
628-649
676-699
700-721
726-748
816-839
840-861
864-885
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 Leucine-rich 6.1 114-139
287-310
311-335
383-407
429-453
504-527
528-556
698-721
724-748
814-837
838-862
IPR013210 Leucine-rich repeat-containing N-terminal, type 2
HMMPfam PF08263 LRRNT_2 2.5e-09 33-85
IPR025875 Leucine rich repeat 4
HMMPfam PF12799 LRR_4 7.8e-09 505-541
no_ID  
FPrintScan PR00019 LEURICHRPT 5.2e-06 386-399
528-541
Gene3D G3DSA:3.80.10.10 no description 1.3e-49 94-198
199-461
462-648
795-905
HMMPanther PTHR24420 FAMILY 1.1e-155 95-984
HMMPanther PTHR24420:SF480SUBFAMILY NOT 1.1e-155 95-984
HMMPfam PF13855 LRR_8 2.9e-09 265-324
361-420
432-488
655-710
794-851
HMMSmart SM00365 Leucine-rich 27 311-337
453-474
528-565
674-703
838-859
Seg seg seg NA 15-19
204-223
354-367
476-487
857-873
974-984
superfamily SSF52047 RNI-like 3.8e-65 264-571
superfamily SSF52058 L 3.7e-42 578-908
27-305
Putative transmembrane regions
  From To
TM segments
SOSUI		 1 23
Wolf-PSORT
Lj0g3v0161109.1	extr 4, chlo 3, nucl 2, plas 2, vacu 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0161109.1