Miyakogusa Predicted Gene
- Lj0g3v0160979.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MJD2_SOYBN |
117 |
65.0 |
69.0 |
(tr|I1MJD2) Cysteine synthase OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT3G04940.1 |
90.5 |
51.5 |
61.9 |
| Symbols: ATCYSD1, CYSD1 | cysteine synthase D1 | chr3:1365681-1367508 FORWARD LENGTH=324 |
| Medicago |
Medtr1g081625.1 |
108 |
62.6 |
67.7 |
| O-acetylserine (thiol) lyase | HC | chr1:36286105-36289258 | 20130731 |
| Soybean |
Glyma15g41600.1 |
117 |
65.0 |
69.0 |
|
| LJGI |
gnl|LJGI|TC60583 |
83.8 |
89.2 |
89.2 |
similar to UniRef100_A3RM06 Cluster: Cysteine synthase; n=1; Glycine max|Rep: Cysteine synthase - Glycine max (Soybean), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0160979.1 |
length: 73 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.40.50.1100 |
no description |
1.9e-10 |
2-45 |
| HMMPanther |
PTHR10314 |
SER/THR |
2e-14 |
1-70 |
| HMMPanther |
PTHR10314:SF8 |
CYSTEINE |
2e-14 |
1-70 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
2 |
24 |
| 40 |
62 |
- Wolf-PSORT
Lj0g3v0160979.1 extr 7, chlo 2, cyto 2, nucl 1, mito 1, E.R. 1, cyto_pero 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0160979.1 |
|