Miyakogusa Predicted Gene

Lj0g3v0159789.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IA59_MEDTR 703 76.0 84.4 (tr|G7IA59) DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_1g061970 PE=4 SV=1
TAIR_pep AT3G53110.1 566 62.7 77.7 | Symbols: LOS4 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:19687968-19690423 FORWARD LENGTH=496
Medicago Medtr1g061970.1 703 76.0 84.4 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr1:27069344-27076281 | 20130731
Soybean Glyma18g32190.1 691 74.6 84.7  
LJGI gnl|LJGI|GO032305 769 100.0 100.0 similar to UniRef100_A7QJ99 Cluster: Chromosome chr8 scaffold_106, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_106, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0159789.1 length: 478 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 8.4e-22 341-428
HMMSmart SM00490 helicase 1.4e-24 335-428
ProfileScan PS51194 HELICASE_CTER 19.910 309-469
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 4.4e-32 96-268
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 3.4e-37 90-296
ProfileScan PS51192 HELICASE_ATP_BIND_1 22.920 104-280
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 9.418 70-99
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.1e-57 140-451
no_ID  
Gene3D G3DSA:3.40.50.300 no description 9e-41 54-276
279-465
HMMPanther PTHR24031 FAMILY 1.3e-166 63-475
HMMPanther PTHR24031:SF58 SUBFAMILY 1.3e-166 63-475
Seg seg seg NA 4-30
42-54
262-277
Wolf-PSORT
Lj0g3v0159789.1	chlo 5, cyto 3, chlo_mito 3, cysk 2.5, cysk_plas 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0159789.1