Miyakogusa Predicted Gene
- Lj0g3v0157999.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T1X1_LOTJA |
371 |
77.3 |
83.7 |
(tr|I3T1X1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G56970.1 |
138 |
42.0 |
63.7 |
| Symbols: BHLH038, ORG2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21084204-21085094 REVERSE LENGTH=253 |
| Medicago |
Medtr1g048720.1 |
199 |
48.9 |
65.2 |
| transcription factor ORG2-like protein | HC | chr1:18792728-18791151 | 20130731 |
| Soybean |
Glyma03g28630.1 |
270 |
59.7 |
73.4 |
|
| LJGI |
gnl|LJGI|TC58238 |
460 |
85.2 |
85.2 |
weakly similar to UniRef100_A7QJJ0 Cluster: Chromosome chr8 scaffold_106, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_106, whole genome shotgun sequence - Vitis vinifera (Grape), partial (59%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0157999.1 |
length: 257 aa. |
| IPR011598 |
Myc-type, basic helix-loop-helix (bHLH) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| Gene3D |
G3DSA:4.10.280.10 |
no description |
1.9e-13 |
65-142 |
| HMMPfam |
PF00010 |
HLH |
6.8e-11 |
68-121 |
| HMMSmart |
SM00353 |
helix |
2.3e-09 |
73-126 |
| ProfileScan |
PS50888 |
BHLH |
14.627 |
67-120 |
| superfamily |
SSF47459 |
HLH, |
9.3e-15 |
65-153 |
| IPR015660 |
Achaete-scute transcription factor-related |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| HMMPanther |
PTHR13935 |
ACHAETE-SCUTE |
2.1e-39 |
69-256 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
117-138 |
| HMMPanther |
PTHR13935:SF2 |
GB |
2.1e-39 |
69-256 |
- Wolf-PSORT
Lj0g3v0157999.1 nucl 8.5, cyto_nucl 5, plas 1.5, golg_plas 1.5, chlo 1, mito 1, pero 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0157999.1 |
|