Miyakogusa Predicted Gene
- Lj0g3v0156189.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LRS5_SOYBN |
227 |
76.1 |
83.1 |
(tr|I1LRS5) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G05270.1 |
172 |
69.4 |
87.4 |
| Symbols: | TraB family protein | chr1:1531806-1534305 REVERSE LENGTH=371 |
| Medicago |
Medtr4g046707.1 |
220 |
73.9 |
83.1 |
| TraB family protein | HC | chr4:16509081-16515053 | 20130731 |
| Soybean |
Glyma12g10880.1 |
228 |
76.1 |
83.1 |
|
| LJGI |
gnl|LJGI|GO019130 |
139 |
92.3 |
92.3 |
similar to UniRef100_A7PXJ0 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0156189.1 |
length: 142 aa. |
| IPR002816 |
Pheromone shutdown, TraB |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01963 |
TraB |
4.1e-18 |
1-104 |
| no_ID |
|
| HMMPanther |
PTHR21530 |
PHEROMONE |
7.6e-38 |
1-138 |
| HMMPanther |
PTHR21530:SF0 |
SUBFAMILY |
7.6e-38 |
1-138 |
| Seg |
seg |
seg |
NA |
122-136 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
116 |
138 |
- Wolf-PSORT
Lj0g3v0156189.1 extr 6, cyto 2, vacu 2, chlo 1, mito 1, plas 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cyto_pero 1, E.R._plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0156189.1 |
Not targeted |
-29.133 |
-13.979 |
-2.370 |
28.70% |
-12.785
|