Miyakogusa Predicted Gene
- Lj0g3v0155589.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KK36_MEDTR |
403 |
85.8 |
93.2 |
(tr|G7KK36) Membrane protein, putative OS=Medicago truncatula GN=MTR_4g132570 PE=4 SV=1 |
| TAIR_pep |
AT1G11960.1 |
356 |
72.9 |
89.4 |
| Symbols: | ERD (early-responsive to dehydration stress) family protein | chr1:4039871-4043143 REVERSE LENGTH=771 |
| Medicago |
Medtr4g132570.2 |
403 |
85.8 |
93.2 |
| ERD (early-responsive to dehydration stress) family protein | HC | chr4:55428053-55422340 | 20130731 |
| Soybean |
Glyma07g39320.1 |
400 |
87.2 |
93.2 |
|
| LJGI |
gnl|LJGI|AV780051 |
813 |
96.8 |
96.8 |
similar to UniRef100_UPI0000162D32 Cluster: early-responsive to dehydration protein-related / ERD protein-related; n=1; Arabidopsis thaliana|Rep: early-responsive to dehydration protein-related / ERD protein-related - Arabidopsis thaliana, partial (39%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0155589.1 |
length: 219 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR13018 |
PROBABLE |
7.9e-79 |
2-211 |
| HMMPanther |
PTHR13018:SF5 |
RSN1(YEAST)-RELATED |
7.9e-79 |
2-211 |
| HMMPfam |
PF13967 |
RSN1_TM |
7.8e-44 |
8-179 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
6 |
28 |
| 61 |
83 |
| 98 |
120 |
| 159 |
181 |
- Wolf-PSORT
Lj0g3v0155589.1 chlo 4, vacu 3, cyto 2, plas 2, E.R. 2, chlo_mito 2, E.R._plas 2, cyto_E.R. 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0155589.1 |
|