Miyakogusa Predicted Gene

Lj0g3v0155229.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LJG4_MEDTR 581 72.1 80.3 (tr|G7LJG4) Cellulose synthase OS=Medicago truncatula GN=MTR_8g086600 PE=4 SV=1
TAIR_pep AT5G45760.1 412 54.6 72.8 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:18561121-18563005 FORWARD LENGTH=360
Medicago Medtr8g086605.1 610 76.2 84.6 | transducin/WD-like repeat-protein | HC | chr8:35940332-35933082 | 20130731
Soybean Glyma05g29250.1 515 71.5 79.9  
LJGI gnl|LJGI|TC58758 1503 100.0 100.0 weakly similar to UniRef100_UPI0000162829 Cluster: transducin family protein / WD-40 repeat family protein; n=1; Arabidopsis thaliana|Rep: transducin family protein / WD-40 repeat family protein - Arabidopsis thaliana, partial (49%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0155229.1 length: 389 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.1e-07 23-58
297-334
HMMSmart SM00320 WD40 14 18-58
62-101
108-147
150-191
292-334
347-387
ProfileScan PS50082 WD_REPEATS_2 11.945 299-334
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.1e-12 23-196
288-388
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.023 25-200
299-343
superfamily SSF50978 WD40 9.6e-35 17-389
no_ID  
HMMPanther PTHR22847 WD40 1.1e-96 22-334
HMMPanther PTHR22847:SF206HYPOTHETICAL PROTEIN 1.1e-96 22-334
Seg seg seg NA 239-251
Wolf-PSORT
Lj0g3v0155229.1	chlo 4, nucl 3, E.R. 3, plas 2, cyto_nucl 2, chlo_mito 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0155229.1