Miyakogusa Predicted Gene

Lj0g3v0154989.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KTN3_SOYBN 1408 67.8 74.4 (tr|K7KTN3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G31160.1 629 53.2 68.6 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | chr4:15145936-15152939 FORWARD LENGTH=1883
Medicago Medtr3g108470.1 1340 68.3 76.2 | DDB1- and CUL4-associated factor-like protein | HC | chr3:50133071-50123613 | 20130731
Soybean Glyma06g07880.1 1276 63.6 69.9  
LJGI gnl|LJGI|FS361548 1086 99.6 99.6 similar to UniRef100_A7P540 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0154989.1 length: 1095 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMSmart SM00320 WD40 2.8e+02 704-744
747-787
792-830
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 0.0081 362-394
ProfileScan PS50896 LISH 9.090 362-394
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.3e-17 703-940
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 10.838 712-796
superfamily SSF50978 WD40 2.8e-17 719-942
no_ID  
HMMPanther PTHR13129 VPRBP 1.1e-271 1-1095
HMMPanther PTHR13129:SF4 SUBFAMILY 1.1e-271 1-1095
Seg seg seg NA 211-227
257-275
332-347
457-472
647-660
1022-1047
1054-1076
Wolf-PSORT
Lj0g3v0154989.1	nucl 6, cyto 5, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0154989.1