Miyakogusa Predicted Gene
- Lj0g3v0152989.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SK05_LOTJA |
227 |
100.0 |
100.0 |
(tr|I3SK05) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1 |
| TAIR_pep |
AT4G27360.1 |
152 |
69.9 |
82.5 |
| Symbols: | Dynein light chain type 1 family protein | chr4:13694032-13694517 FORWARD LENGTH=103 |
| Medicago |
Medtr8g464690.1 |
193 |
84.5 |
93.6 |
| dynein light chain type 1 family protein | HC | chr8:22911007-22910269 | 20130731 |
| Soybean |
Glyma06g42180.1 |
201 |
89.1 |
95.5 |
|
| LJGI |
gnl|LJGI|GO024529 |
660 |
100.0 |
100.0 |
similar to UniRef100_A7P1E7 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (88%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0152989.1 |
length: 110 aa. |
| IPR001372 |
Dynein light chain, type 1/2 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005875 |
microtubule associated complex |
|
|
| Biological Process |
GO:0007017 |
microtubule-based process |
|
|
| Gene3D |
G3DSA:3.30.740.10 |
no description |
6.7e-32 |
1-89 |
| HMMPanther |
PTHR11886 |
DYNEIN |
1.3e-50 |
1-91 |
| HMMPfam |
PF01221 |
Dynein_light |
9.9e-31 |
1-90 |
| superfamily |
SSF54648 |
DLC |
7.9e-27 |
5-91 |
| no_ID |
|
| HMMPanther |
PTHR11886:SF22 |
SUBFAMILY |
1.3e-50 |
1-91 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
69 |
91 |
- Wolf-PSORT
Lj0g3v0152989.1 nucl 4, mito 4, chlo 2, cyto 2, cyto_mito 2, nucl_plas 2, mito_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0152989.1 |
|