Miyakogusa Predicted Gene

Lj0g3v0152909.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JYY9_SOYBN 486 85.0 90.0 (tr|I1JYY9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G21410.1 414 72.4 83.7 | Symbols: SKP2A | F-box/RNI-like superfamily protein | chr1:7497479-7499386 FORWARD LENGTH=360
Medicago Medtr3g088895.2 482 83.9 90.0 | F-box SKP2A-like protein | HC | chr3:40692425-40696084 | 20130731
Soybean Glyma04g42160.2 486 85.0 90.0  
LJGI gnl|LJGI|TC60685 1086 99.6 99.6 similar to UniRef100_O49286 Cluster: F-box/LRR-repeat protein 5; n=1; Arabidopsis thaliana|Rep: F-box/LRR-repeat protein 5 - Arabidopsis thaliana (Mouse-ear cress), partial (49%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0152909.1 length: 280 aa.
IPR006553 Leucine-rich repeat, cysteine-containing subtype
method AccNumber shortName E-value location
HMMSmart SM00367 Leucine-rich 0.27 12-38
39-64
65-90
91-117
118-143
144-169
170-195
211-236
no_ID  
Gene3D G3DSA:3.80.10.10 no description 1.1e-39 7-254
HMMPanther PTHR23125 F-BOX/LEUCINE 1.9e-158 1-273
HMMPanther PTHR23125:SF192SUBFAMILY NOT 1.9e-158 1-273
HMMPfam PF13516 LRR_6 0.76 118-141
144-168
170-193
superfamily SSF52047 RNI-like 7.8e-34 5-248
Wolf-PSORT
Lj0g3v0152909.1	cyto 8, nucl 4, cyto_E.R. 4, cyto_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0152909.1