Miyakogusa Predicted Gene

Lj0g3v0151829.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KLS5_SOYBN 326 59.9 71.2 (tr|I1KLS5) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G38720.1 200 60.4 79.2 | Symbols: | unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). | chr5:15508417-15510472 REVERSE LENGTH=306

Medicago Medtr4g051625.2 321 55.6 66.8 | ribosomal RNA-processing protein | HC | chr4:18597591-18591773 | 20130731

Soybean Glyma07g32580.2 326 59.9 71.2

LJGI gnl|LJGI|TC72093 918 100.0 100.0 similar to UniRef100_Q9FKR4 Cluster: Emb|CAB41546.1|; n=1; Arabidopsis thaliana|Rep: Emb|CAB41546.1| - Arabidopsis thaliana (Mouse-ear cress), partial (39%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0151829.1 length: 291 aa.

IPR024326 Ribosomal RNA-processing protein 7

method AccNumber shortName E-value location

HMMPanther PTHR13191 RIBOSOMAL 1.9e-54 144-291

HMMPfam PF12923 RRP7 2.9e-36 158-291

no_ID

Coil coil coiled-coil NA 12-33
52-73
173-205
258-286

Seg seg seg NA 12-24
120-128
188-203

Wolf-PSORT

Lj0g3v0151829.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0151829.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KLS5_SOYBN	326	59.9	71.2	(tr\|I1KLS5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G38720.1	200	60.4	79.2	\| Symbols: \| unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). \| chr5:15508417-15510472 REVERSE LENGTH=306
Medicago	Medtr4g051625.2	321	55.6	66.8	\| ribosomal RNA-processing protein \| HC \| chr4:18597591-18591773 \| 20130731
Soybean	Glyma07g32580.2	326	59.9	71.2
LJGI	gnl\|LJGI\|TC72093	918	100.0	100.0	similar to UniRef100_Q9FKR4 Cluster: Emb\|CAB41546.1\|; n=1; Arabidopsis thaliana\|Rep: Emb\|CAB41546.1\| - Arabidopsis thaliana (Mouse-ear cress), partial (39%)

IPR024326	Ribosomal RNA-processing protein 7
Lj0g3v0151829.1				length: 291 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR13191	RIBOSOMAL	1.9e-54	144-291
HMMPfam	PF12923	RRP7	2.9e-36	158-291
no_ID
Coil	coil	coiled-coil	NA	12-33 52-73 173-205 258-286
Seg	seg	seg	NA	12-24 120-128 188-203