Miyakogusa Predicted Gene
- Lj0g3v0151809.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1NIC1_SOYBN |
803 |
64.5 |
75.3 |
(tr|I1NIC1) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G51640.1 |
605 |
72.3 |
84.3 |
| Symbols: YLS7, TBL17 | Plant protein of unknown function (DUF828) | chr5:20975401-20977378 REVERSE LENGTH=501 |
| Medicago |
Medtr6g061710.5 |
765 |
65.4 |
72.9 |
| trichome birefringence-like protein | HC | chr6:23943092-23938443 | 20130731 |
| Soybean |
Glyma20g35460.1 |
803 |
64.5 |
75.3 |
|
| LJGI |
gnl|LJGI|TC78812 |
365 |
83.2 |
83.2 |
similar to UniRef100_A7QGT9 Cluster: Chromosome chr16 scaffold_94, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_94, whole genome shotgun sequence - Vitis vinifera (Grape), partial (56%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0151809.1 |
length: 582 aa. |
| IPR025846 |
PMR5 N-terminal domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF14416 |
PMR5N |
4.7e-22 |
223-276 |
| IPR026057 |
PC-Esterase |
| HMMPfam |
PF13839 |
PC-Esterase |
1.4e-63 |
277-572 |
| no_ID |
|
| HMMPanther |
PTHR32285 |
FAMILY |
2.7e-140 |
213-582 |
| Seg |
seg |
seg |
NA |
61-72 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
23 |
45 |
- Wolf-PSORT
Lj0g3v0151809.1 chlo 4, nucl 3.5, plas 3, cyto_nucl 3, cyto 1.5, golg_plas 1.5, cysk_plas 1.5, E.R._plas 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0151809.1 |
|