Miyakogusa Predicted Gene

Lj0g3v0150579.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MP75_SOYBN 1497 96.2 97.6 (tr|I1MP75) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G03190.2 1363 86.0 92.9 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase protein | chr1:775822-779863 FORWARD LENGTH=758
Medicago Medtr2g084735.1 1482 94.1 97.6 | DNA repair helicase (rad3) | HC | chr2:35933773-35944460 | 20130731
Soybean Glyma16g28290.1 1497 96.2 97.6  
LJGI gnl|LJGI|GO028101 829 99.8 99.8 homologue to UniRef100_A7PU96 Cluster: Chromosome chr7 scaffold_31, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_31, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0150579.1 length: 745 aa.
IPR001945 Xeroderma pigmentosum group D protein
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0004003 ATP-dependent DNA helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006289 nucleotide-excision repair    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
FPrintScan PR00852 XRODRMPGMNTD 2.1e-83 8-25
273-292
308-326
333-354
372-394
403-421
492-509
636-658
707-727
IPR006554 Helicase-like, DEXD box c2 type
Molecular Function GO:0004003 ATP-dependent DNA helicase activity    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMSmart SM00488 no description 9.5e-126 8-280
IPR006555 ATP-dependent helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
Molecular Function GO:0008026 ATP-dependent helicase activity    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF13307 Helicase_C_2 2.7e-41 524-697
HMMSmart SM00491 no description 3e-69 542-686
IPR010614 DEAD2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0004003 ATP-dependent DNA helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF06733 DEAD_2 5.5e-48 72-255
IPR010643 Domain of unknown function DUF1227
Cellular Component GO:0005634 nucleus    
HMMPfam PF06777 DUF1227 4.9e-48 269-413
IPR013020 DNA helicase (DNA repair), Rad3 type
HMMTigr TIGR00604 rad3: 2e-235 9-708
IPR014013 Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type
Molecular Function GO:0016817 hydrolase activity, acting on acid anhydrides    
ProfileScan PS51193 HELICASE_ATP_BIND_2 38.503 7-285
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.9e-11 28-683
no_ID  
Coil coil coiled-coil NA 256-277
Gene3D G3DSA:3.40.50.300 no description 1.1e-11 186-240
HMMPanther PTHR11472 DNA 0 1-745
HMMPanther PTHR11472:SF1 DNA 0 1-745
Putative transmembrane regions
  From To
TM segments
SOSUI		 522 544
Wolf-PSORT
Lj0g3v0150579.1	cyto 4, E.R. 3, cyto_nucl 3, chlo 2, nucl 2, vacu 2, cyto_pero 2, E.R._plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0150579.1