Miyakogusa Predicted Gene

Lj0g3v0149989.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LMQ8_SOYBN 1583 74.8 86.2 (tr|K7LMQ8) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
TAIR_pep AT1G63020.2 998 49.7 66.8 | Symbols: NRPD1A | nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453
Medicago Medtr5g011000.1 1574 72.3 83.9 | DNA-directed RNA polymerase | HC | chr5:3060764-3075383 | 20130731
Soybean Glyma01g42480.1 1552 73.7 85.5  
LJGI gnl|LJGI|TC71447 1302 99.8 99.8 weakly similar to UniRef100_Q1L5X6 Cluster: DNA-directed RNA polymerase; n=1; Solanum lycopersicum|Rep: DNA-directed RNA polymerase - Solanum lycopersicum (Tomato) (Lycopersicon esculentum), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0149989.2 length: 1048 aa.
IPR000722 RNA polymerase, alpha subunit
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF00623 RNA_pol_Rpb1_2 1.5e-06 3-52
IPR007066 RNA polymerase Rpb1, domain 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04983 RNA_pol_Rpb1_3 8.7e-21 58-207
IPR007081 RNA polymerase Rpb1, domain 5
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04998 RNA_pol_Rpb1_5 2.4e-05 409-476
IPR007083 RNA polymerase Rpb1, domain 4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF05000 RNA_pol_Rpb1_4 4.7e-10 273-340
IPR009010 Aspartate decarboxylase-like domain
Gene3D G3DSA:2.40.40.20 no description 5.8e-07 3-55
IPR015801 Copper amine oxidase, N2/N3-terminal
Molecular Function GO:0005507 copper ion binding    
Biological Process GO:0009308 amine metabolic process    
Molecular Function GO:0048038 quinone binding    
Gene3D G3DSA:3.10.450.40 no description 1e-23 928-1016
IPR021602 Protein of unknown function DUF3223
HMMPfam PF11523 DUF3223 5.3e-23 939-1012
no_ID  
HMMPanther PTHR19376 DNA-DIRECTED 9.3e-219 1-731
HMMPanther PTHR19376:SF10 DNA-DIRECTED 9.3e-219 1-731
Seg seg seg NA 201-213
superfamily SSF64484 beta 5.6e-83 1-863
Wolf-PSORT
Lj0g3v0149989.2	chlo 5, cyto 4, nucl 3, chlo_mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0149989.2