Miyakogusa Predicted Gene
- Lj0g3v0146489.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JAE3_MEDTR |
375 |
78.4 |
88.0 |
(tr|G7JAE3) Neurochondrin OS=Medicago truncatula GN=MTR_3g106410 PE=4 SV=1 |
| TAIR_pep |
AT4G32050.1 |
280 |
58.8 |
76.2 |
| Symbols: | neurochondrin family protein | chr4:15496620-15500717 FORWARD LENGTH=618 |
| Medicago |
Medtr3g106410.2 |
375 |
78.4 |
88.0 |
| neurochondrin protein | HC | chr3:49176740-49182193 | 20130731 |
| Soybean |
Glyma02g29250.1 |
345 |
77.4 |
85.7 |
|
| LJGI |
gnl|LJGI|TC63768 |
1247 |
99.7 |
99.7 |
weakly similar to UniRef100_A7P602 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0146489.1 |
length: 241 aa. |
| IPR008709 |
Neurochondrin |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR13109 |
NEUROCHONDRIN |
2.6e-90 |
3-241 |
| no_ID |
|
| HMMPanther |
PTHR13109:SF1 |
NEUROCHONDRIN-RELATED |
2.6e-90 |
3-241 |
| HMMPfam |
PF05536 |
Neurochondrin |
1.6e-59 |
6-228 |
- Wolf-PSORT
Lj0g3v0146489.1 E.R. 4, chlo 2, nucl 2, plas 2, nucl_plas 2, cyto 1, mito 1, vacu 1, golg 1, cysk_nucl 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0146489.1 |
|