Miyakogusa Predicted Gene
- Lj0g3v0141909.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7LFI2_MEDTR |
301 |
45.2 |
57.9 |
(tr|G7LFI2) F-box protein OS=Medicago truncatula GN=MTR_8g063440 PE=4 SV=1 |
| TAIR_pep |
AT4G12560.2 |
75.9 |
24.6 |
43.4 |
| Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413 |
| Medicago |
Medtr8g063440.1 |
301 |
45.2 |
57.9 |
| F-box protein interaction domain protein | HC | chr8:26606178-26607478 | 20130731 |
| Soybean |
Glyma03g35240.1 |
158 |
42.9 |
55.1 |
|
| LJGI |
gnl|LJGI|GO010439 |
555 |
87.9 |
87.9 |
similar to UniRef100_A2Q609 Cluster: Cyclin-like F-box; F-box protein interaction domain; n=1; Medicago truncatula|Rep: Cyclin-like F-box; F-box protein interaction domain - Medicago truncatula (Barrel medic), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0141909.1 |
length: 398 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| superfamily |
SSF81383 |
F-box |
1.4e-07 |
8-147 |
| IPR006527 |
F-box associated domain, type 1 |
| HMMPfam |
PF07734 |
FBA_1 |
1.3e-12 |
242-355 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
3.1e-28 |
114-338 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
0.00063 |
7-44 |
| Seg |
seg |
seg |
NA |
183-202 |
- Wolf-PSORT
Lj0g3v0141909.1 cyto 9.5, cyto_E.R. 5.5, cysk 2, nucl 1, golg 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0141909.1 |
|