Miyakogusa Predicted Gene

Lj0g3v0140239.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IL56_MEDTR 1176 91.7 95.8 (tr|G7IL56) Auxin response factor OS=Medicago truncatula GN=MTR_2g005240 PE=4 SV=1
TAIR_pep AT1G59750.4 869 71.2 79.4 | Symbols: ARF1 | auxin response factor 1 | chr1:21980414-21984193 FORWARD LENGTH=660
Medicago Medtr2g005240.1 1176 91.7 95.8 | auxin response factor 2 | HC | chr2:92911-103331 | 20130731
Soybean Glyma12g28550.1 1100 87.2 91.1  
LJGI gnl|LJGI|TC59367 765 100.0 100.0 homologue to UniRef100_A4PSF1 Cluster: AUX/IAA protein; Transcriptional factor B3; Auxin response factor; n=1; Medicago truncatula|Rep: AUX/IAA protein; Transcriptional factor B3; Auxin response factor - Medicago truncatula (Barrel medic), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0140239.1 length: 614 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 2.6e-30 440-581
IPR003340 B3 DNA binding domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 1.6e-21 69-169
HMMSmart SM01019 B3 1.2e-21 69-171
ProfileScan PS50863 B3 11.251 69-171
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 1.6e-32 195-277
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 28.374 491-573
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 9.8e-40 66-184
superfamily SSF101936 DNA-binding 4.3e-48 52-199
no_ID  
HMMPanther PTHR31384 FAMILY 7.1e-188 1-397
superfamily SSF54277 CAD 3.4e-12 478-567
Wolf-PSORT
Lj0g3v0140239.1	nucl 11, chlo 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0140239.1