Miyakogusa Predicted Gene

Lj0g3v0140069.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KPK5_SOYBN 374 61.8 73.6 (tr|K7KPK5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G22760.1 169 47.0 67.9 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:9678012-9679165 FORWARD LENGTH=295
Medicago Medtr4g097940.1 307 53.9 67.4 | basic helix loop helix (bHLH) DNA-binding family protein | HC | chr4:40442807-40439726 | 20130731
Soybean Glyma11g04690.1 298 51.2 66.9  
LJGI gnl|LJGI|CB827992 767 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0140069.1 length: 340 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 3.6e-15 162-220
HMMPfam PF00010 HLH 2.3e-09 161-208
HMMSmart SM00353 helix 4.3e-15 164-213
ProfileScan PS50888 BHLH 15.758 158-207
superfamily SSF47459 HLH, 1.6e-16 156-240
no_ID  
Coil coil coiled-coil NA 197-225
HMMPanther PTHR23042 CIRCADIAN 7.4e-24 155-336
HMMPanther PTHR23042:SF23 SUBFAMILY 7.4e-24 155-336
Seg seg seg NA 74-89
327-338
Putative transmembrane regions
  From To
TM segments
SOSUI		 310 332
Wolf-PSORT
Lj0g3v0140069.1	nucl 5, golg 4, cyto 1.5, cyto_pero 1.5, chlo 1, plas 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0140069.1