Miyakogusa Predicted Gene
- Lj0g3v0135039.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M307_SOYBN |
760 |
87.4 |
93.4 |
(tr|I1M307) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G78860.1 |
419 |
49.6 |
67.0 |
| Symbols: | D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | chr1:29646168-29647499 REVERSE LENGTH=443 |
| Medicago |
Medtr2g076590.1 |
667 |
78.1 |
86.3 |
| epidermis-specific secreted EP1-like glycoprotein | HC | chr2:32063871-32065553 | 20130731 |
| Soybean |
Glyma13g34520.1 |
760 |
87.4 |
93.4 |
|
| LJGI |
gnl|LJGI|TC74244 |
2710 |
99.9 |
99.9 |
weakly similar to UniRef100_A7P215 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (71%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0135039.1 |
length: 456 aa. |
| IPR001480 |
Bulb-type lectin domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:2.90.10.10 |
no description |
9.8e-24 |
86-192 |
| HMMPfam |
PF01453 |
B_lectin |
4e-27 |
114-211 |
| HMMSmart |
SM00108 |
Bulb-type |
1.8e-34 |
70-187 |
| ProfileScan |
PS50927 |
BULB_LECTIN |
14.870 |
67-185 |
| superfamily |
SSF51110 |
alpha-D-mannose-specific |
1.9e-35 |
94-246 |
| no_ID |
|
| HMMPanther |
PTHR32444 |
FAMILY |
4.6e-152 |
28-454 |
| Seg |
seg |
seg |
NA |
30-46 |
- Wolf-PSORT
Lj0g3v0135039.1 cyto 4, E.R. 4, cyto_E.R. 4, chlo 2, nucl 2, cyto_pero 2, E.R._plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0135039.1 |
|