Miyakogusa Predicted Gene

Lj0g3v0134889.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7K7L1_MEDTR 999 57.2 67.5 (tr|G7K7L1) Receptor-like kinase OS=Medicago truncatula GN=MTR_5g085920 PE=4 SV=1
TAIR_pep AT2G34930.1 308 30.7 46.0 | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905
Medicago Medtr4g011860.1 1027 61.6 73.2 | leucine-rich receptor-like kinase family protein | LC | chr4:3025455-3022150 | 20130731
Soybean Glyma16g29300.1 761 51.3 66.4  
LJGI gnl|LJGI|TC63614 65.9 97.3 97.3 weakly similar to UniRef100_A7QGC3 Cluster: Chromosome undetermined scaffold_91, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_91, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0134889.1 length: 965 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.11 119-142
300-316
910-930
ProfileScan PS51450 LRR 5.032 119-140
169-192
193-216
300-319
271-291
326-347
428-450
405-427
476-498
506-528
529-551
553-574
651-673
696-717
722-743
745-767
769-792
793-815
909-931
933-955
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 Leucine-rich 1.9e+02 117-142
167-190
191-215
269-292
426-456
474-497
527-551
694-717
720-743
767-791
931-955
IPR013210 Leucine-rich repeat-containing N-terminal, type 2
HMMPfam PF08263 LRRNT_2 1.6e-09 44-87
no_ID  
FPrintScan PR00019 LEURICHRPT 3.4e-05 170-183
426-439
Gene3D G3DSA:3.80.10.10 no description 6.8e-10 41-313
321-595
608-871
910-957
HMMPanther PTHR24420 FAMILY 2.3e-100 97-957
HMMPfam PF13516 LRR_6 0.27 269-291
427-442
HMMPfam PF13855 LRR_8 1.3e-06 168-226
770-825
Seg seg seg NA 110-126
138-154
931-946
superfamily SSF52058 L 1.9e-06 44-392
670-957
316-599
602-668
Putative transmembrane regions
  From To
TM segments
SOSUI		 5 27
Wolf-PSORT
Lj0g3v0134889.1	nucl 5, chlo 4, plas 2, mito 1, extr 1, vacu 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0134889.1