Miyakogusa Predicted Gene
- Lj0g3v0132099.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T3G0_LOTJA |
371 |
97.3 |
99.5 |
(tr|I3T3G0) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G40670.1 |
260 |
67.0 |
81.6 |
| Symbols: | PQ-loop repeat family protein / transmembrane family protein | chr5:16285968-16287591 FORWARD LENGTH=270 |
| Medicago |
Medtr0018s0310.1 |
325 |
81.7 |
93.0 |
| lysosomal cystine transporter family protein | HC | scaffold0018:182962-186863 | 20130731 |
| Soybean |
Glyma19g23610.1 |
303 |
81.7 |
90.3 |
|
| LJGI |
gnl|LJGI|TC64287 |
977 |
97.1 |
97.1 |
similar to UniRef100_A7PLW5 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (83%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0132099.3 |
length: 186 aa. |
| IPR005282 |
Lysosomal cystine transporter |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR13131 |
CYSTINOSIN |
5.7e-79 |
1-185 |
| IPR006603 |
Cystinosin/ERS1p repeat |
| HMMSmart |
SM00679 |
Repeated |
4.9e-08 |
81-112 |
| no_ID |
|
| HMMPanther |
PTHR13131:SF5 |
SUBFAMILY |
5.7e-79 |
1-185 |
| HMMPfam |
PF04193 |
PQ-loop |
1.1e-13 |
69-124 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
5 |
27 |
| 38 |
59 |
| 63 |
85 |
| 137 |
159 |
- Wolf-PSORT
Lj0g3v0132099.3 chlo 9, plas 2, nucl 1, mito 1, E.R. 1, golg_plas 1, cysk_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0132099.3 |
|