Miyakogusa Predicted Gene
- Lj0g3v0130849.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7I6Q0_MEDTR |
485 |
83.0 |
89.6 |
(tr|G7I6Q0) DNA mismatch repair protein mutS OS=Medicago truncatula GN=MTR_1g045670 PE=4 SV=1 |
| TAIR_pep |
AT3G24320.1 |
317 |
56.7 |
71.6 |
| Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118 |
| Medicago |
Medtr1g045670.1 |
485 |
83.0 |
89.6 |
| DNA mismatch repair protein | HC | chr1:17167339-17152759 | 20130731 |
| Soybean |
Glyma10g26450.1 |
412 |
76.2 |
84.3 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0130849.1 |
length: 288 aa. |
| IPR000432 |
DNA mismatch repair protein MutS, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006298 |
mismatch repair |
|
|
| Molecular Function |
GO:0030983 |
mismatched DNA binding |
|
|
| HMMPfam |
PF00488 |
MutS_V |
1.8e-20 |
1-118 |
| HMMSmart |
SM00534 |
ATPase |
1e-08 |
1-120 |
| PatternScan |
PS00486 |
DNA_MISMATCH_REPAIR_2 |
NA |
15-31 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
7.9e-16 |
1-119 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
7e-22 |
1-119 |
| HMMPanther |
PTHR11361 |
DNA |
3.3e-76 |
1-201 |
| HMMPanther |
PTHR11361:SF49 |
PREDICTED |
3.3e-76 |
1-201 |
- Wolf-PSORT
Lj0g3v0130849.1 nucl 4, chlo 3, cyto 3, mito 2, cysk_nucl 2, cyto_pero 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0130849.1 |
|