Miyakogusa Predicted Gene

Lj0g3v0129549.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KSP1_SOYBN 768 85.2 89.8 (tr|I1KSP1) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G55350.4 647 70.7 81.8 | Symbols: DEK1, ATDEK1 | calpain-type cysteine protease family | chr1:20654463-20664501 REVERSE LENGTH=2151

Medicago Medtr8g088520.1 746 83.3 88.9 | calpain family cysteine protease | HC | chr8:36702342-36724494 | 20130731

Soybean Glyma08g13220.2 768 85.2 89.8

LJGI gnl|LJGI|BW596745 850 97.1 97.1 similar to UniRef100_A7P092 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0129549.1 length: 440 aa.

IPR000169 Cysteine peptidase, cysteine active site

method AccNumber shortName E-value location

PatternScan PS00139 THIOL_PROTEASE_CYS NA 407-418

IPR001300 Peptidase C2, calpain, catalytic domain

Molecular Function GO:0004198 calcium-dependent cysteine-type endopeptidase activity

Cellular Component GO:0005622 intracellular

Biological Process GO:0006508 proteolysis

HMMPfam PF00648 Peptidase_C2 1.4e-14 348-433

ProfileScan PS50203 CALPAIN_CAT 17.812 347-440

IPR008985 Concanavalin A-like lectin/glucanases superfamily

superfamily SSF49899 Concanavalin 2.1e-12 113-242

IPR013320 Concanavalin A-like lectin/glucanase, subgroup

Gene3D G3DSA:2.60.120.200 no description 1.5e-09 125-241

no_ID

HMMPanther PTHR10183 CALPAIN 2.6e-64 136-440

HMMPanther PTHR10183:SF31 CALPAIN-RELATED 2.6e-64 136-440

HMMPfam PF13385 Laminin_G_3 1.8e-08 76-235

Seg seg seg NA 19-32
272-287

superfamily SSF54001 Cysteine 5.6e-19 313-433

Wolf-PSORT

Lj0g3v0129549.1 cyto 7, chlo 5, nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0129549.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KSP1_SOYBN	768	85.2	89.8	(tr\|I1KSP1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G55350.4	647	70.7	81.8	\| Symbols: DEK1, ATDEK1 \| calpain-type cysteine protease family \| chr1:20654463-20664501 REVERSE LENGTH=2151
Medicago	Medtr8g088520.1	746	83.3	88.9	\| calpain family cysteine protease \| HC \| chr8:36702342-36724494 \| 20130731
Soybean	Glyma08g13220.2	768	85.2	89.8
LJGI	gnl\|LJGI\|BW596745	850	97.1	97.1	similar to UniRef100_A7P092 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)

IPR000169	Cysteine peptidase, cysteine active site
Lj0g3v0129549.1				length: 440 aa.
method	AccNumber	shortName	E-value	location
PatternScan	PS00139	THIOL_PROTEASE_CYS	NA	407-418
IPR001300	Peptidase C2, calpain, catalytic domain
Molecular Function	GO:0004198	calcium-dependent cysteine-type endopeptidase activity
Cellular Component	GO:0005622	intracellular
Biological Process	GO:0006508	proteolysis
HMMPfam	PF00648	Peptidase_C2	1.4e-14	348-433
ProfileScan	PS50203	CALPAIN_CAT	17.812	347-440
IPR008985	Concanavalin A-like lectin/glucanases superfamily
superfamily	SSF49899	Concanavalin	2.1e-12	113-242
IPR013320	Concanavalin A-like lectin/glucanase, subgroup
Gene3D	G3DSA:2.60.120.200	no description	1.5e-09	125-241
no_ID
HMMPanther	PTHR10183	CALPAIN	2.6e-64	136-440
HMMPanther	PTHR10183:SF31	CALPAIN-RELATED	2.6e-64	136-440
HMMPfam	PF13385	Laminin_G_3	1.8e-08	76-235
Seg	seg	seg	NA	19-32 272-287
superfamily	SSF54001	Cysteine	5.6e-19	313-433