Miyakogusa Predicted Gene
- Lj0g3v0128619.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
E2FKJ5_MEDTR |
901 |
65.1 |
79.3 |
(tr|E2FKJ5) Sieve element occlusion b OS=Medicago truncatula GN=SEOb PE=2 SV=1 |
| TAIR_pep |
AT3G01680.1 |
305 |
30.9 |
50.3 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740 |
| Medicago |
Medtr1g074990.1 |
901 |
65.1 |
79.3 |
| sieve element occlusion protein | HC | chr1:33137296-33141230 | 20130731 |
| Soybean |
Glyma20g34670.1 |
828 |
62.3 |
75.8 |
|
| LJGI |
gnl|LJGI|TC59131 |
2117 |
99.4 |
99.4 |
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0128619.1 |
length: 680 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Coil |
coil |
coiled-coil |
NA |
270-295 |
| HMMPanther |
PTHR13871 |
THIOREDOXIN |
7.7e-12 |
364-508 |
| HMMPanther |
PTHR13871:SF10 |
SUBFAMILY |
7.7e-12 |
364-508 |
| Seg |
seg |
seg |
NA |
239-248 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
127 |
148 |
| 233 |
254 |
- Wolf-PSORT
Lj0g3v0128619.1 chlo 4, cyto 3, extr 2, cyto_nucl 2, cyto_E.R. 2, cysk_plas 1.33333, mito_plas 1.33333
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0128619.1 |
|