Miyakogusa Predicted Gene
- Lj0g3v0127839.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KSW9_SOYBN |
294 |
55.7 |
65.0 |
(tr|K7KSW9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G42630.1 |
160 |
54.8 |
65.5 |
| Symbols: KAN4, ATS | Homeodomain-like superfamily protein | chr5:17073997-17075747 REVERSE LENGTH=276 |
| Medicago |
Medtr1g021520.1 |
238 |
51.3 |
59.4 |
| myb-like DNA-binding domain, shaqkyf class protein | HC | chr1:6453855-6457812 | 20130731 |
| Soybean |
Glyma17g36500.1 |
267 |
52.4 |
61.3 |
|
| LJGI |
gnl|LJGI|TC80735 |
101 |
83.9 |
83.9 |
similar to UniRef100_A7PZ25 Cluster: Chromosome chr4 scaffold_39, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_39, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0127839.1 |
length: 305 aa. |
| IPR001005 |
SANT/Myb domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003682 |
chromatin binding |
|
|
| HMMPfam |
PF00249 |
Myb_DNA-binding |
2.8e-11 |
119-170 |
| IPR006447 |
Myb domain, plants |
| HMMTigr |
TIGR01557 |
myb_SHAQKYF: |
1.8e-22 |
118-171 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
3.9e-26 |
116-172 |
| superfamily |
SSF46689 |
Homeodomain-like |
7.6e-15 |
113-175 |
| no_ID |
|
| HMMPanther |
PTHR31496 |
FAMILY |
1.3e-44 |
112-231 |
| Seg |
seg |
seg |
NA |
43-55 |
- Wolf-PSORT
Lj0g3v0127839.1 nucl 6, chlo 4, cyto 1, extr 1, vacu 1, E.R. 1, E.R._vacu 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0127839.1 |
|