Miyakogusa Predicted Gene

Lj0g3v0127099.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K4A2_SOYBN 1761 66.5 74.3 (tr|K7K4A2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G51120.1 626 53.7 68.1 | Symbols: | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding | chr3:18986026-18991886 REVERSE LENGTH=1292
Medicago Medtr5g021500.1 1787 72.8 79.5 | zinc finger CCCH domain protein | HC | chr5:8311147-8303973 | 20130731
Soybean Glyma11g07890.1 1523 61.0 67.9  
LJGI gnl|LJGI|TC69076 1515 99.9 99.9 similar to UniRef100_A7QE26 Cluster: Chromosome chr4 scaffold_83, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_83, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0127099.2 length: 1276 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50103 ZF_C3H1 14.483 1251-1276
IPR001965 Zinc finger, PHD-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 1.6e-07 78-124
IPR003121 SWIB/MDM2 domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF02201 SWIB 8.4e-18 305-375
superfamily SSF47592 SWIB/MDM2 1.4e-19 285-385
IPR003169 GYF
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:3.30.1490.40 no description 6.4e-18 748-801
HMMPfam PF02213 GYF 3.6e-14 749-795
HMMSmart SM00444 Contains 6.2e-16 747-802
ProfileScan PS50829 GYF 15.090 746-800
superfamily SSF55277 GYF 4.9e-17 730-807
IPR004343 Plus-3
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0016570 histone modification    
HMMPfam PF03126 Plus-3 8.8e-24 440-545
ProfileScan PS51360 PLUS3 24.089 436-569
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 3e-10 42-124
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.6e-08 73-131
IPR018144 Plus-3 domain, subgroup
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0016570 histone modification    
HMMSmart SM00719 Short 9.9e-39 436-546
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 79-139
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
ProfileScan PS50016 ZF_PHD_2 8.627 76-142
IPR019835 SWIB domain
HMMSmart SM00151 SWI 0.0057 301-379
no_ID  
Coil coil coiled-coil NA 570-591
Gene3D G3DSA:1.10.245.10 no description 2e-22 299-380
HMMPanther PTHR26218 FAMILY 1.1e-162 40-595
HMMPanther PTHR26218:SF23 SUBFAMILY 1.1e-162 40-595
Seg seg seg NA 64-69
633-647
711-725
880-890
1089-1101
superfamily SSF90229 CCCH 1.3e-06 1249-1276
Wolf-PSORT
Lj0g3v0127099.2	nucl 12, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0127099.2