Miyakogusa Predicted Gene

Lj0g3v0127099.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K4A2_SOYBN 933 78.1 85.7 (tr|K7K4A2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G51120.1 590 54.5 68.7 | Symbols: | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding | chr3:18986026-18991886 REVERSE LENGTH=1292
Medicago Medtr5g021500.1 877 78.0 85.8 | zinc finger CCCH domain protein | HC | chr5:8311147-8303973 | 20130731
Soybean Glyma11g07890.1 915 80.7 87.8  
LJGI gnl|LJGI|TC71243 686 100.0 100.0 weakly similar to UniRef100_Q7XCX5 Cluster: Plus-3 domain containing protein, expressed; n=1; Oryza sativa Japonica Group|Rep: Plus-3 domain containing protein, expressed - Oryza sativa subsp. japonica (Rice), partial (4%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0127099.1 length: 618 aa.
IPR001965 Zinc finger, PHD-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 1.6e-07 78-124
IPR003121 SWIB/MDM2 domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF02201 SWIB 3.3e-18 305-375
superfamily SSF47592 SWIB/MDM2 1.4e-19 285-385
IPR004343 Plus-3
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0016570 histone modification    
HMMPfam PF03126 Plus-3 3.2e-24 440-545
ProfileScan PS51360 PLUS3 24.089 436-569
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 3e-10 42-124
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.7e-08 73-130
IPR018144 Plus-3 domain, subgroup
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0016570 histone modification    
HMMSmart SM00719 Short 9.9e-39 436-546
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 79-139
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
ProfileScan PS50016 ZF_PHD_2 8.627 76-142
IPR019835 SWIB domain
HMMSmart SM00151 SWI 0.0057 301-379
no_ID  
Coil coil coiled-coil NA 570-591
Gene3D G3DSA:1.10.245.10 no description 7.6e-23 299-380
HMMPanther PTHR26218 FAMILY 3.4e-165 40-597
HMMPanther PTHR26218:SF23 SUBFAMILY 3.4e-165 40-597
Seg seg seg NA 64-69
Wolf-PSORT
Lj0g3v0127099.1	cyto 6, chlo 3, nucl 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0127099.1