Miyakogusa Predicted Gene

Lj0g3v0126989.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KFF1_MEDTR 61.2 90.9 93.9 (tr|G7KFF1) Niemann-Pick C1 protein OS=Medicago truncatula GN=MTR_5g099070 PE=4 SV=1
TAIR_pep AT1G42470.1 52.8 75.8 90.9 | Symbols: | Patched family protein | chr1:15926987-15935128 FORWARD LENGTH=1272
Medicago Medtr5g099070.1 61.2 90.9 93.9 | niemann-pick C1-like protein | HC | chr5:43436947-43416142 | 20130731
Soybean Glyma02g48070.1 57.8 84.8 90.9  
LJGI gnl|LJGI|TC79988 60.0 81.8 81.8 similar to UniRef100_A7QPC0 Cluster: Chromosome chr18 scaffold_137, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_137, whole genome shotgun sequence - Vitis vinifera (Grape), partial (14%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0126989.1 length: 92 aa.
IPR000731 Sterol-sensing domain
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
ProfileScan PS50156 SSD 13.096 28-92
IPR003392 Patched
Molecular Function GO:0008158 hedgehog receptor activity    
Cellular Component GO:0016020 membrane    
HMMPfam PF02460 Patched 3.9e-08 3-90
no_ID  
Gene3D G3DSA:1.20.1640.10 no description 5.7e-06 6-90
HMMPanther PTHR10796 PATCHED-RELATED 1.9e-31 1-92
HMMPanther PTHR10796:SF35 NIEMANN-PICK 1.9e-31 1-92
Seg seg seg NA 4-25
59-89
Putative transmembrane regions
  From To
TM segments
SOSUI		 27 49
63 85
Wolf-PSORT
Lj0g3v0126989.1	chlo 3, nucl 3, extr 3, cyto 2, chlo_mito 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0126989.1