Miyakogusa Predicted Gene
- Lj0g3v0126749.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9R8H5_RICCO |
88.6 |
26.5 |
41.1 |
(tr|B9R8H5) Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1599830 PE=4 SV=1 |
| TAIR_pep |
--No_Hits--
|
|
|
|
|
| Medicago |
Medtr3g114990.1 |
52.0 |
28.6 |
42.2 |
| ubiquitin-protein ligase | HC | chr3:53705316-53703014 | 20130731 |
| Soybean |
--No_Hits--
|
|
|
|
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0126749.1 |
length: 378 aa. |
| IPR005174 |
Protein of unknown function DUF295 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03478 |
DUF295 |
6.2e-10 |
283-335 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
0.0003 |
9-50 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
139 |
161 |
- Wolf-PSORT
Lj0g3v0126749.1 cyto 11, mito 1, E.R. 1, cysk 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0126749.1 |
|