Miyakogusa Predicted Gene

Lj0g3v0126049.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KP78_SOYBN 732 84.3 92.5 (tr|I1KP78) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G63250.1 634 71.1 85.3 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:23463284-23466451 REVERSE LENGTH=798
Medicago Medtr8g097000.1 731 84.1 92.5 | DEAD-box ATP-dependent RNA helicase family protein | HC | chr8:40729630-40725252 | 20130731
Soybean Glyma08g01540.1 723 82.1 90.1  
LJGI gnl|LJGI|TC71902 735 100.0 100.0 similar to UniRef100_A7QKJ8 Cluster: Chromosome chr2 scaffold_112, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_112, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0126049.1 length: 456 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.7e-18 265-340
HMMSmart SM00490 helicase 2.2e-21 259-340
ProfileScan PS51194 HELICASE_CTER 17.137 235-381
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 4.6e-29 42-189
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 4.1e-26 2-217
ProfileScan PS51192 HELICASE_ATP_BIND_1 23.279 42-201
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.6e-63 62-363
no_ID  
Gene3D G3DSA:3.40.50.300 no description 5.5e-34 42-212
213-375
HMMPanther PTHR24031 FAMILY 1.1e-212 43-456
HMMPanther PTHR24031:SF98 PUTATIVE 1.1e-212 43-456
Seg seg seg NA 13-34
332-345
Putative transmembrane regions
  From To
TM segments
SOSUI		 8 30
Wolf-PSORT
Lj0g3v0126049.1	cyto 6, E.R. 5, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0126049.1