Miyakogusa Predicted Gene
- Lj0g3v0123959.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S777_LOTJA |
154 |
100.0 |
100.0 |
(tr|I3S777) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1 |
| TAIR_pep |
AT1G74500.1 |
119 |
77.9 |
94.8 |
| Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 | chr1:27998298-27998668 REVERSE LENGTH=93 |
| Medicago |
Medtr3g438070.1 |
143 |
93.5 |
97.4 |
| transcription factor | HC | chr3:13020251-13021792 | 20130731 |
| Soybean |
Glyma04g34080.1 |
148 |
97.4 |
100.0 |
|
| LJGI |
gnl|LJGI|TC70099 |
553 |
100.0 |
100.0 |
similar to UniRef100_A7QI73 Cluster: Chromosome chr17 scaffold_101, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_101, whole genome shotgun sequence - Vitis vinifera (Grape), partial (84%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0123959.1 |
length: 92 aa. |
| IPR011598 |
Myc-type, basic helix-loop-helix (bHLH) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| Gene3D |
G3DSA:4.10.280.10 |
no description |
1.6e-07 |
20-75 |
| HMMPfam |
PF00010 |
HLH |
2.1e-05 |
20-60 |
| ProfileScan |
PS50888 |
BHLH |
9.604 |
6-60 |
| superfamily |
SSF47459 |
HLH, |
3.4e-06 |
20-66 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
57-78 |
| Seg |
seg |
seg |
NA |
2-15 |
- Wolf-PSORT
Lj0g3v0123959.1 nucl 5.5, cyto_nucl 3.5, mito 3, chlo 2, golg_plas 2, plas 1.5, golg 1.5, cyto_mito 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0123959.1 |
|