Miyakogusa Predicted Gene

Lj0g3v0122329.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S6N6_LOTJA 281 100.0 100.0 (tr|I3S6N6) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G09920.1 265 91.3 97.8 | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | RNA polymerase II, Rpb4, core protein | chr5:3096276-3097370 FORWARD LENGTH=138
Medicago Medtr8g011890.2 279 99.3 99.3 | RNA polymerase II, Rpb4, core protein | HC | chr8:3253475-3257317 | 20130731
Soybean Glyma03g22220.1 279 98.6 100.0  
LJGI gnl|LJGI|TC69955 827 100.0 100.0 homologue to UniRef100_Q4ABY4 Cluster: 4D11_3; n=1; Brassica rapa subsp. pekinensis|Rep: 4D11_3 - Brassica rapa subsp. pekinensis (Chinese cabbage), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0122329.1 length: 138 aa.
IPR005574 RNA polymerase II, Rpb4
method AccNumber shortName E-value location
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF03874 RNA_pol_Rpb4 3.6e-27 23-132
IPR006590 RNA polymerase II, Rpb4, core
HMMSmart SM00657 DNA-directed 5.2e-57 16-138
IPR010997 HRDC-like
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0044237 cellular metabolic process    
superfamily SSF47819 HRDC-like 6.4e-37 3-138
no_ID  
HMMPanther PTHR21297 DNA-DIRECTED 1.5e-48 3-138
Wolf-PSORT
Lj0g3v0122329.1	cyto 5, chlo 3, extr 3, cyto_pero 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0122329.1